El objetivo de este manual es poder instalar paquetes R en nuestro home cuando no está dentro de los instalados por defecto en HPC Drago.
Procedemos a acceder a Drago
# ssh usuario@drago.csic.es
Procedemos a cargar módulo necesario:
[usuario@drago31010015 ~]$ module spider R
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R:
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Description:
R is a free software environment for statistical computing and graphics.
Versions:
R/4.0.3
R/4.1.2
Other possible modules matches:
ANTLR AmberTools Arrow Bismark Brotli CUDAcore CompareM DBCSR DendroPy FragGeneScan FriBidi GCCcore GDRCopy GObject-Introspection GROMACS Ghostscript GlobalArrays GraphicsMagick ...
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To find other possible module matches execute:
$ module -r spider '.*R.*'
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For detailed information about a specific "R" package (including how to load the modules) use the module's full name.
Note that names that have a trailing (E) are extensions provided by other modules.
For example:
$ module spider R/4.1.2
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[usuario@drago31010015 ~]$ module spider R/4.1.2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R: R/4.1.2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Description:
R is a free software environment for statistical computing and graphics.
You will need to load all module(s) on any one of the lines below before the "R/4.1.2" module is available to load.
GCC/11.2.0 OpenMPI/4.1.1
Help:
Description
===========
R is a free software environment for statistical computing
and graphics.
More information
================
- Homepage: https://www.r-project.org/
Included extensions
===================
abc-2.1, abc.data-1.0, abe-3.0.1, abind-1.4-5, acepack-1.4.1, adabag-4.2,
ade4-1.7-18, ADGofTest-0.3, aggregation-1.0.1, AICcmodavg-2.3-1,
akima-0.6-2.2, alabama-2015.3-1, AlgDesign-1.2.0, alluvial-0.1-2,
AnalyzeFMRI-1.1-24, animation-2.7, aod-1.3.1, apcluster-1.4.9, ape-5.5,
argparse-2.1.2, arm-1.12-2, askpass-1.1, asnipe-1.1.16, assertive-0.3-6,
assertive.base-0.0-9, assertive.code-0.0-3, assertive.data-0.0-3,
assertive.data.uk-0.0-2, assertive.data.us-0.0-2, assertive.datetimes-0.0-3,
assertive.files-0.0-2, assertive.matrices-0.0-2, assertive.models-0.0-2,
assertive.numbers-0.0-2, assertive.properties-0.0-4,
assertive.reflection-0.0-5, assertive.sets-0.0-3, assertive.strings-0.0-3,
assertive.types-0.0-3, assertthat-0.2.1, AUC-0.3.0, audio-0.1-8, aws-2.5-1,
awsMethods-1.1-1, b-a, backports-1.3.0, bacr-1.0.1, bartMachine-1.2.6,
bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.8,
batchmeans-1.0-4, BayesianTools-0.1.7, bayesm-3.1-4, BayesPen-1.0,
bayesplot-1.8.1, BB-2019.10-1, BBmisc-1.11, bbmle-1.0.24, BCEE-1.3.0,
BDgraph-2.64, bdsmatrix-1.3-4, beanplot-1.2, beeswarm-0.4.0, betareg-3.1-4,
BH-1.75.0-0, BiasedUrn-1.07, bibtex-0.4.2.3, BIGL-1.6.5, bigmemory-4.5.36,
bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.4-2, biom-0.3.12,
biomod2-3.5.1, bit-4.0.4, bit64-4.0.5, bitops-1.0-7, blavaan-0.3-17,
blob-1.2.2, BMA-3.18.15, bmp-0.3, bnlearn-4.7, bold-1.2.0, boot-1.3-28,
bootstrap-2019.6, Boruta-7.0.0, brew-1.0-6, brglm-0.7.2, bridgedist-0.1.0,
bridgesampling-1.1-2, brio-1.1.2, brms-2.16.1, Brobdingnag-1.2-6,
broom-0.7.10, broom.helpers-1.4.0, broom.mixed-0.2.7, bslib-0.3.1, bst-0.3-23,
c-o, cachem-1.0.6, Cairo-1.5-12.2, calibrate-1.7.7, callr-3.7.0, car-3.0-11,
carData-3.0-4, caret-6.0-90, catlearn-0.8, caTools-1.18.2, CBPS-0.22,
celestial-1.4.6, cellranger-1.1.0, cgdsr-1.3.0, cghFLasso-0.2-1,
checkmate-2.0.0, chemometrics-1.4.2, chron-2.3-56, circlize-0.4.13,
circular-0.4-93, class-7.3-19, classInt-0.4-3, cli-3.1.0, clipr-0.7.1,
clisymbols-1.2.0, clue-0.3-60, cluster-2.1.2, clusterGeneration-1.3.7,
clusterRepro-0.9, clustree-0.4.3, clValid-0.7, cmprsk-2.2-11, cNORM-2.1.0,
cobalt-4.3.1, cobs-1.3-4, coda-0.19-4, codetools-0.2-18, coin-1.4-2,
collapse-1.6.5, colorspace-2.0-2, colourpicker-1.1.1, combinat-0.0-8,
ComICS-1.0.4, commonmark-1.7, compositions-2.0-2, CompQuadForm-1.4.3,
conditionz-0.1.0, conquer-1.2.0, copCAR-2.0-4, copula-1.0-1, corpcor-1.6.10,
corrplot-0.90, covr-3.5.1, CovSel-1.2.1, covsim-0.2.1, cowplot-1.1.1,
coxed-0.3.3, coxme-2.2-16, cpp11-0.4.0, crayon-1.4.2, credentials-1.3.1,
crosstalk-1.1.1, crul-1.1.0, cSEM-0.4.0, csSAM-1.2.4, ctmle-0.1.2,
cubature-2.0.4.2, cubelyr-1.0.1, curl-4.3.2, cvAUC-1.1.0, CVST-0.2-2, d-a,
d3Network-0.5.2.1, dagitty-0.3-1, data.table-1.14.2, data.tree-1.0.0,
DataCombine-0.2.21, date-1.2-39, dbarts-0.9-20, DBI-1.1.1, dbplyr-2.1.1,
dcurver-0.9.2, ddalpha-1.3.11, deal-1.2-39, debugme-1.1.0, deldir-1.0-6,
dendextend-1.15.2, DEoptim-2.2-6, DEoptimR-1.0-9, Deriv-4.1.3, desc-1.4.0,
DescTools-0.99.43, deSolve-1.30, devtools-2.4.2, dfidx-0.0-4, DHARMa-0.4.4,
dHSIC-2.1, diagram-1.6.5, DiagrammeR-1.0.6.1, DiceKriging-1.6.0,
dichromat-2.0-0, diffobj-0.3.5, digest-0.6.28, dimRed-0.2.3, diptest-0.76-0,
DiscriMiner-0.1-29, dismo-1.3-5, distillery-1.2-1, distr-2.8.0, distrEx-2.8.0,
distributional-0.2.2, DistributionUtils-0.6-0, diveRsity-1.9.90, DMCfun-2.0.2,
docstring-1.0.0, doMC-1.3.7, doParallel-1.0.16, doRNG-1.8.2, doSNOW-1.0.19,
dotCall64-1.0-1, downloader-0.4, dplyr-1.0.7, dr-3.0.10, drgee-1.1.10,
DRR-0.0.4, drugCombo-1.2.1, DT-0.19, dtangle-2.0.9, dtplyr-1.1.0, DTRreg-1.7,
dtw-1.22-3, dummies-1.5.6, dygraphs-1.1.1.6, dynamicTreeCut-1.63-1,
e1071-1.7-9, earth-5.3.1, EasyABC-1.5, elementR-1.3.7, ellipse-0.4.2,
ellipsis-0.3.2, emdbook-1.3.12, emulator-1.2-21, energy-1.7-8, ENMeval-2.0.1,
entropy-1.3.1, EnvStats-2.4.0, ergm-4.1.2, ergm.count-4.0.2, evaluate-0.14,
EValue-4.1.2, evd-2.3-3, Exact-3.0, expm-0.999-6, ExPosition-2.8.23,
expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.1-1,
FactoMineR-2.4, FactorCopula-0.8, fail-1.3, fansi-0.5.0, farver-2.1.0,
fastcluster-1.2.3, fasterize-1.0.3, fastICA-1.2-3, fastmap-1.1.0,
fastmatch-1.1-3, fdrtool-1.2.16, feather-0.3.5, ff-4.0.5, ffbase-0.13.3,
fftw-1.0-6, fftwtools-0.9-11, fields-13.3, filehash-2.4-2, finalfit-1.0.3,
findpython-1.0.7, fishMod-0.29, fitdistrplus-1.1-6, flashClust-1.01-2,
flexclust-1.4-0, flexmix-2.3-17, fma-2.4, FME-1.3.6.2, fmri-1.9.6, FNN-1.1.3,
fontawesome-0.2.2, forcats-0.5.1, foreach-1.5.1, forecast-8.15,
foreign-0.8-81, formatR-1.11, Formula-1.2-4, formula.tools-1.7.1,
fossil-0.4.0, fpc-2.2-9, fpp-0.5, fracdiff-1.5-1, fs-1.5.0,
futile.logger-1.4.3, futile.options-1.0.1, future-1.23.0, future.apply-1.8.1,
g-r, g-r, g-r, gam-1.20, gamlss-5.3-4, gamlss.data-6.0-1, gamlss.dist-5.3-2,
gamlss.tr-5.1-7, gamm4-0.2-6, gap-1.2.3-1, gapfill-0.9.6-1, gargle-1.2.0,
gaussquad-1.0-2, gbm-2.1.8, gbRd-0.4-11, gclus-1.3.2, gdalUtils-2.0.3.2,
gdata-2.18.0, gdistance-1.3-6, gee-4.13-20, geepack-1.3-2, geex-1.0.12,
geiger-2.0.7, GeneNet-1.2.15, generics-0.1.1, genoPlotR-0.8.11, GenSA-1.1.7,
geojsonsf-2.0.1, geometries-0.2.0, geometry-0.4.5, gert-1.4.1, getopt-1.20.3,
GetoptLong-1.0.5, GGally-2.1.2, ggbeeswarm-0.6.0, ggdag-0.2.4, ggExtra-0.9,
ggfan-0.1.3, ggforce-0.3.3, ggnetwork-0.5.10, ggplot2-3.3.5, ggpubr-0.4.0,
ggraph-2.0.5, ggrepel-0.9.1, ggridges-0.5.3, ggsci-2.9, ggsignif-0.6.3,
ggvis-0.4.7, gh-1.3.0, GillespieSSA-0.6.1, git2r-0.28.0, gitcreds-0.1.1,
GJRM-0.2-5.1, glasso-1.11, gld-2.6.2, gllvm-1.3.1, glmmML-1.1.1,
glmmTMB-1.1.2.3, glmnet-4.1-2, GlobalOptions-0.1.2, globals-0.14.0,
glue-1.4.2, gmm-1.6-6, gmodels-2.18.1, gmp-0.6-2, gnumeric-0.7-8,
goftest-1.2-3, gomms-1.0, googledrive-2.0.0, googlesheets4-1.0.0, gower-0.2.2,
GPArotation-2014.11-1, gplots-3.1.1, graphlayouts-0.7.1, grf-2.0.2,
gridBase-0.4-7, gridExtra-2.3, grImport2-0.2-0, grpreg-3.4.0, GSA-1.03.1,
gsalib-2.1, gsl-2.1-7, gsw-1.0-6, gt-0.3.1, gtable-0.3.0, gtools-3.9.2,
gtsummary-1.5.0, GUTS-1.1.1, gWidgets2-1.0-8, gWidgets2tcltk-1.0-6,
GxEScanR-2.0.2, h2o-3.34.0.3, hal9001-0.4.1, harmony-0.1.0, hash-2.2.6.1,
haven-2.4.3, hdf5r-1.3.4, hdm-0.3.1, heatmap3-1.1.9, here-1.0.1,
hexbin-1.28.2, HiddenMarkov-1.8-13, highr-0.9, Hmisc-4.6-0, hms-1.1.1,
htmlTable-2.3.0, htmltools-0.5.2, htmlwidgets-1.5.4, httpcode-0.3.0,
httpuv-1.6.3, httr-1.4.2, huge-1.3.5, hunspell-3.0.1, hwriter-1.3.2,
HWxtest-1.1.9, ica-1.0-2, IDPmisc-1.1.20, idr-1.2, ids-1.0.1, ie2misc-0.8.6,
igraph-1.2.7, image.binarization-0.1.2, imager-0.42.10, imagerExtra-1.3.2,
ineq-0.2-13, influenceR-0.1.0.1, infotheo-1.2.0, ini-0.3.1, inline-0.3.19,
intergraph-2.0-2, interpretR-0.2.4, intrinsicDimension-1.2.0, inum-1.0-4,
ipred-0.9-12, irace-3.4.1, irlba-2.3.3, ismev-1.42, Iso-0.0-18.1,
isoband-0.2.5, ISOcodes-2021.02.24, iterators-1.0.13, itertools-0.1-3,
JADE-2.0-3, janeaustenr-0.1.5, JBTools-0.7.2.9, jiebaR-0.11, jiebaRD-0.1,
jomo-2.7-2, jpeg-0.1-9, jquerylib-0.1.4, jsonify-1.2.1, jsonlite-1.7.2,
jstable-1.0.7, kde1d-1.0.3, kedd-1.0.3, kernlab-0.9-29, KernSmooth-2.23-20,
klaR-0.6-15, knitr-1.36, KODAMA-1.8, kohonen-3.0.10, ks-1.13.2, labdsv-2.0-1,
labeling-0.4.2, labelled-2.9.0, laeken-0.5.2, lambda.r-1.2.4,
LaplacesDemon-16.1.6, lars-1.2, lassosum-0.4.5, later-1.3.0, lattice-0.20-45,
latticeExtra-0.6-29, lava-1.6.10, lavaan-0.6-9, lazy-1.2-16, lazyeval-0.2.2,
lda-1.4.2, ldbounds-1.1-1.1, leafem-0.1.6, leaflet-2.0.4.1,
leaflet.providers-1.9.0, leafsync-0.1.0, leaps-3.1, LearnBayes-2.15.1,
leiden-0.3.9, lhs-1.1.3, libcoin-1.0-9, lifecycle-1.0.1, limSolve-1.5.6,
linkcomm-1.0-14, linprog-0.9-2, liquidSVM-1.2.4, listenv-0.8.0, lme4-1.1-27.1,
lmerTest-3.1-3, lmom-2.8, Lmoments-1.3-1, lmtest-0.9-38, lobstr-1.1.1,
locfdr-1.1-8, locfit-1.5-9.4, logcondens-2.1.6, logistf-1.24,
logspline-2.1.16, longitudinal-1.1.12, longmemo-1.1-2, loo-2.4.1,
lpSolve-5.6.15, lpSolveAPI-5.5.2.0-17.7, lqa-1.0-3, lsei-1.3-0, lslx-0.6.10,
lubridate-1.8.0, lwgeom-0.2-8, m-e, magic-1.5-9, magick-2.7.3, magrittr-2.0.1,
MALDIquant-1.20, manipulateWidget-0.11.1, mapproj-1.2.7, maps-3.4.0,
maptools-1.1-2, markdown-1.1, MASS-7.3-54, Matching-4.9-11, MatchIt-4.3.0,
mathjaxr-1.4-0, matlab-1.0.2, Matrix-1.3-4, matrixcalc-1.0-5,
MatrixModels-0.5-0, matrixStats-0.61.0, maxLik-1.5-2, maxlike-0.1-8,
maxnet-0.1.4, mboost-2.9-5, mclust-5.4.7, mcmc-0.9-7, MCMCpack-1.6-0,
mcmcse-1.5-0, mda-0.5-2, medflex-0.6-7, mediation-4.5.0, memoise-2.0.0,
memuse-4.2-1, metadat-1.0-0, metafor-3.0-2, MetaUtility-2.1.2, mets-1.2.9,
mgcv-1.8-38, mgsub-1.7.3, mhsmm-0.4.16, mi-1.0, mice-3.13.0, miceadds-3.11-6,
microbenchmark-1.4.9, MIIVsem-0.5.8, mime-0.12, minerva-1.5.10,
miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, mirt-1.35.1, misc3d-0.9-1,
miscTools-0.6-26, missForest-1.4, mitml-0.4-3, mitools-2.4, mixtools-1.2.0,
mlbench-2.1-3, mlegp-3.1.8, mlogit-1.1-1, mlr-2.19.0, mltools-0.3.5,
mnormt-2.0.2, ModelMetrics-1.2.2.2, modelr-0.1.8, modeltools-0.2-23,
momentfit-0.2, moments-0.14, mpath-0.4-2.19, mRMRe-2.1.2, msm-1.6.9,
mstate-0.3.2, multcomp-1.4-17, multicool-0.1-12, multipol-1.0-7,
munsell-0.5.0, mvabund-4.1.12, mvnfast-0.2.7, mvtnorm-1.1-3, nabor-0.5.0,
naniar-0.6.1, natserv-1.0.0, naturalsort-0.1.3, ncbit-2013.03.29, ncdf4-1.17,
NCmisc-1.1.6, network-1.17.1, networkDynamic-0.11.0, neuralnet-1.44.2,
neuRosim-0.2-12, ngspatial-1.2-2, NISTunits-1.0.1, nleqslv-3.3.2,
nlme-3.1-153, nloptr-1.2.2.2, NLP-0.2-1, nlsem-0.8, nnet-7.3-16, nnls-1.4,
nonnest2-0.5-5, nor1mix-1.3-0, norm-1.0-9.5, nortest-1.0-4, np-0.60-11,
npsurv-0.5-0, numDeriv-2016.8-1.1, oai-0.3.2, oce-1.4-0, OceanView-1.0.6,
oddsratio-2.0.1, openair-2.8-6, OpenMx-2.19.8, openssl-1.4.5, openxlsx-4.2.4,
operator.tools-1.6.3, optextras-2019-12.4, optimr-2019-12.16,
optimx-2021-10.12, optmatch-0.9-15, optparse-1.7.1, ordinal-2019.12-10,
origami-1.0.5, orthopolynom-1.0-5, outliers-0.14, p-a, packrat-0.7.0,
pacman-0.5.1, pammtools-0.5.8, pamr-1.56.1, pan-1.6, parallelly-1.28.1,
parallelMap-1.5.1, ParamHelpers-1.14, parsedate-1.2.1, party-1.3-9,
partykit-1.2-15, pastecs-1.3.21, patchwork-1.1.1, pbapply-1.5-0,
pbivnorm-0.6.0, pbkrtest-0.5.1, PCAmatchR-0.3.0, pcaPP-1.9-74, pdp-0.7.0,
PearsonDS-1.2.1, pec-2022.03.06, penalized-0.9-51, penfa-0.1.1, peperr-1.3,
PermAlgo-1.1, permute-0.9-5, phangorn-2.7.1, pheatmap-1.0.12,
phylobase-0.8.10, phytools-0.7-90, pillar-1.6.4, pim-2.0.2, pinfsc50-1.2.0,
pixmap-0.4-12, pkgbuild-1.2.0, pkgconfig-2.0.3, pkgload-1.2.3,
pkgmaker-0.32.2, plogr-0.2.0, plot3D-1.4, plot3Drgl-1.0.2, plotly-4.10.0,
plotmo-3.6.1, plotrix-3.8-2, pls-2.8-0, plyr-1.8.6, png-0.1-7,
PoissonSeq-1.1.2, poLCA-1.4.1, polspline-1.1.19, polyclip-1.10-0,
polycor-0.7-10, polynom-1.4-0, posterior-1.1.0, prabclus-2.3-2, pracma-2.3.3,
praise-1.0.0, PresenceAbsence-1.1.9, preseqR-4.0.0, prettyGraphs-2.1.6,
prettyunits-1.1.1, pROC-1.18.0, processx-3.5.2, prodlim-2019.11.13,
profileModel-0.6.1, proftools-0.99-3, progress-1.2.2, progressr-0.9.0,
projpred-2.0.2, promises-1.2.0.1, proto-1.0.0, proxy-0.4-26, pryr-0.1.5,
ps-1.6.0, pscl-1.5.5, pspline-1.0-18, psych-2.1.9, Publish-2020.12.23,
pulsar-0.3.7, purrr-0.3.4, pvclust-2.2-0, qgam-1.3.3, qgraph-1.9, qqman-0.1.8,
qrnn-2.0.5, quadprog-1.5-8, quantmod-0.4.18, quantreg-5.86, questionr-0.7.5,
R.cache-0.15.0, R.matlab-3.6.2, R.methodsS3-1.8.1, R.oo-1.24.0, R.rsp-0.44.0,
R.utils-2.11.0, R6-2.5.1, randomForest-4.6-14, randomForestSRC-2.13.0,
randtoolbox-1.31.1, rangeModelMetadata-0.1.4, ranger-0.13.1, RANN-2.6.1,
rapidjsonr-1.2.0, rappdirs-0.3.3, raster-3.5-2, rasterVis-0.51.0,
ratelimitr-0.4.1, rbibutils-2.2.4, rbison-1.0.0, Rborist-0.2-3, RCAL-2.0,
Rcgmin-2013-2.21, RCircos-1.2.1, rcmdcheck-1.4.0, RColorBrewer-1.1-2,
Rcpp-1.0.7, RcppArmadillo-0.10.7.0.0, RcppEigen-0.3.3.9.1, RcppGSL-0.3.10,
RcppParallel-5.1.4, RcppProgress-0.4.2, RcppRoll-0.3.0, RcppThread-1.0.0,
RCurl-1.98-1.5, rda-1.0.2-2.1, Rdpack-2.1.2, rdrop2-0.8.2.1, readbitmap-0.1.5,
reader-1.0.6, readODS-1.7.0, readr-2.0.2, readxl-1.3.1, rebird-1.3.0,
recipes-0.1.17, RefFreeEWAS-2.2, registry-0.5-1, regsem-1.8.0, relsurv-2.2-7,
rematch-1.0.1, rematch2-2.1.2, remotes-2.4.1, rentrez-1.2.3, reprex-2.0.1,
resample-0.4, reshape-0.8.8, reshape2-1.4.4, reticulate-1.22, rex-1.2.0,
rgbif-3.6.0, RGCCA-2.1.2, rgdal-1.5-27, rgeos-0.5-8, rgexf-0.16.2,
rgl-0.107.14, Rglpk-0.6-4, ridigbio-0.3.5, RInside-0.2.16, rio-0.5.27,
riskRegression-2022.03.09, ritis-1.0.0, RItools-0.1-17, rJava-1.0-5,
rjson-0.2.20, RJSONIO-1.3-1.6, rlang-0.4.12, rle-0.9.2, rlecuyer-0.3-5,
rmarkdown-2.11, rmeta-3.0, Rmpfr-0.8-7, Rmpi-0.6-9.2, rms-6.2-0, RMTstat-0.3,
rncl-0.8.4, rnetcarto-0.2.4, RNeXML-2.4.5, rngtools-1.5.2, rngWELL-0.10-7,
robustbase-0.93-9, ROCR-1.0-11, ROI-1.0-0, ROI.plugin.glpk-1.0-0, Rook-1.1-1,
rootSolve-1.8.2.3, rotl-3.0.11, roxygen2-7.1.2, rpact-3.2.1, rpart-4.1-15,
rpf-1.0.11, RPMM-1.25, rprojroot-2.0.2, rrcov-1.6-0, rredlist-0.7.0,
rsconnect-0.8.24, Rserve-1.7-3.1, RSNNS-0.4-14, Rsolnp-1.16, RSQLite-2.2.8,
Rssa-1.0.4, rstan-2.21.2, rstantools-2.1.1, rstatix-0.7.0, rstudioapi-0.13,
Rtsne-0.15, Rttf2pt1-1.3.9, RUnit-0.4.32, ruv-0.9.7.1, rversions-2.1.1,
rvertnet-0.8.2, rvest-1.0.2, rvinecopulib-0.6.1.1.1, Rvmmin-2018-4.17.1,
RWeka-0.4-43, RWekajars-3.9.3-2, s-p, s-t, s-t, s2-1.0.7, sampling-2.9,
sandwich-3.0-1, sass-0.4.0, SBdecomp-1.1, scales-1.1.1, scam-1.2-12,
scatterplot3d-0.3-41, sctransform-0.3.2, SDMTools-1.1-221.2, seewave-2.1.8,
segmented-1.3-4, selectr-0.4-2, sem-3.1-13, semPLS-1.0-10, semTools-0.5-5,
sendmailR-1.2-1, sensemakr-0.1.4, seqinr-4.2-8, servr-0.23, sessioninfo-1.2.0,
setRNG-2013.9-1, sf-1.0-3, sfheaders-0.4.0, sfsmisc-1.1-12, shape-1.4.6,
shapefiles-0.7, shiny-1.7.1, shinydashboard-0.7.2, shinyjs-2.0.0,
shinystan-2.5.0, shinythemes-1.2.0, signal-0.7-7, SignifReg-4.2, simex-1.8,
SimSeq-1.4.0, SKAT-2.0.1, slam-0.1-48, sm-2.2-5.7, smoother-1.1, sn-2.0.0,
sna-2.6, SNFtool-2.3.1, snow-0.4-4, SnowballC-0.7.0, snowfall-1.84-6.1,
SOAR-0.99-11, solrium-1.2.0, som-0.3-5.1, soundecology-1.3.3,
sourcetools-0.1.7, sp-1.4-5, spaa-0.2.2, spam-2.7-0, spaMM-3.9.13,
SparseM-1.81, SPAtest-3.1.2, spatial-7.3-14, spatstat-2.2-0,
spatstat.core-2.3-0, spatstat.data-2.1-0, spatstat.geom-2.3-0,
spatstat.linnet-2.3-0, spatstat.sparse-2.0-0, spatstat.utils-2.2-0,
spData-2.0.1, splitstackshape-1.4.8, spls-2.2-3, spocc-1.2.0, spThin-0.2.0,
SQUAREM-2021.1, stabledist-0.7-1, stabs-0.6-4, StanHeaders-2.21.0-7,
stargazer-5.2.2, stars-0.5-3, startupmsg-0.9.6, StatMatch-1.4.0,
statmod-1.4.36, statnet-2019.6, statnet.common-4.5.0, stdReg-3.4.1,
stopwords-2.3, stringdist-0.9.8, stringi-1.7.5, stringr-1.4.0,
strucchange-1.5-2, styler-1.6.2, subplex-1.6, SuperLearner-2.0-28,
SuppDists-1.1-9.5, survey-4.1-1, survival-3.2-13, survivalROC-1.0.3, svd-0.5,
symmoments-1.2.1, sys-3.4, t-c, t-o, tableone-0.13.0, taxize-0.9.99,
tcltk2-1.2-11, tclust-1.4-2, TeachingDemos-2.12, tensor-1.5, tensorA-0.36.2,
tergm-4.0.2, terra-1.4-11, testit-0.13, testthat-3.1.0, TFisher-0.2.0,
TH.data-1.1-0, threejs-0.3.3, tibble-3.1.5, tictoc-1.0.1, tidygraph-1.2.0,
tidyr-1.1.4, tidyselect-1.1.1, tidytext-0.3.2, tidyverse-1.3.1, tiff-0.1-8,
timeDate-3043.102, timereg-2.0.1, tinytex-0.34, tkrplot-0.0-26, tm-0.7-8,
tmap-3.3-2, tmaptools-3.1-1, TMB-1.7.22, tmle-1.5.0.2, tmvnsim-1.0-2,
tmvtnorm-1.4-10, tokenizers-0.2.1, topicmodels-0.2-12, TraMineR-2.2-2,
tree-1.0-41, triebeard-0.3.0, trimcluster-0.1-5, tripack-1.3-9.1,
truncnorm-1.0-8, trust-0.1-8, tseries-0.10-48, tseriesChaos-0.1-13.1,
tsna-0.3.4, tsne-0.1-3, TTR-0.24.2, tuneR-1.3.3.1, twang-2.5, tweedie-2.3.3,
tweenr-1.0.2, tzdb-0.2.0, u-t, ucminf-1.1-4, unbalanced-2.0,
uniqueAtomMat-0.1-3-2, units-0.7-2, unmarked-1.1.1, UpSetR-1.4.0, urca-1.3-0,
urltools-1.7.3, uroot-2.1-2, usethis-2.1.3, utf8-1.2.2, uuid-1.0-2, V8-3.4.2,
vcd-1.4-9, vcfR-1.12.0, vctrs-0.3.8, vegan-2.5-7, VennDiagram-1.7.0,
VGAM-1.1-5, VIM-6.1.1, VineCopula-2.4.3, vioplot-0.3.7, vipor-0.4.5,
viridis-0.6.2, viridisLite-0.4.0, visdat-0.5.3, visNetwork-2.1.0, vroom-1.5.5,
VSURF-1.1.0, waldo-0.3.1, waveslim-1.8.2, wdm-0.2.2, webshot-0.5.2,
WeightSVM-1.7-9, wellknown-0.7.4, whisker-0.4, widgetframe-0.3.1,
WikidataQueryServiceR-1.0.0, WikidataR-2.3.1, WikipediR-1.5.0, wikitaxa-0.4.0,
withr-2.4.2, wk-0.5.0, wordcloud-2.6, worrms-0.4.2, WriteXLS-6.3.0, xfun-0.27,
xgboost-1.4.1.1, xlsx-0.6.5, xlsxjars-0.6.1, XML-3.99-0.8, xml2-1.3.2,
xopen-1.0.0, xtable-1.8-4, xts-0.12.1, yaImpute-1.0-32, yaml-2.2.1,
zeallot-0.1.0, zip-2.2.0, zoo-1.8-9
[usuario@drago31010015 ~]$ module load GCC/11.2.0 OpenMPI/4.1.1 R/4.1.2
module list
Currently Loaded Modules:
1) GCCcore/11.2.0 11) libevent/2.1.12 21) expat/2.4.1 31) lz4/1.9.3 41) gettext/0.21 51) jbigkit/2.1 61) libsndfile/1.0.31 71) GLPK/5.0 81) HDF/4.2.15
2) zlib/1.2.11 12) UCX/1.11.2 22) libpng/1.6.37 32) zstd/1.5.0 42) PCRE/8.45 52) LibTIFF/4.3.0 62) ICU/69.1 72) nodejs/14.17.6 82) GDAL/3.3.2
3) binutils/2.37 13) libfabric/1.13.2 23) Brotli/1.0.9 33) libdrm/2.4.107 43) GLib/2.69.1 53) Java/11.0.2 63) Szip/2.1.1 73) Python/3.9.6 83) MPFR/4.1.0
4) GCC/11.2.0 14) PMIx/4.1.0 24) freetype/2.11.0 34) libglvnd/1.3.3 44) cairo/1.16.0 54) Tk/8.6.11 64) HDF5/1.12.1 74) netCDF/4.8.1 84) libgit2/1.1.1
5) numactl/2.0.14 15) OpenMPI/4.1.1 25) ncurses/6.2 35) libunwind/1.5.0 45) libreadline/8.1 55) cURL/7.78.0 65) UDUNITS/2.2.28 75) GEOS/3.9.1 85) R/4.1.2
6) XZ/5.2.5 16) OpenBLAS/0.3.18 26) util-linux/2.37 36) LLVM/12.0.1 46) Tcl/8.6.11 56) GMP/6.2.1 66) GSL/2.7 76) PROJ/8.1.0
7) libxml2/2.9.10 17) FlexiBLAS/3.0.4 27) fontconfig/2.13.94 37) Mesa/21.1.7 47) SQLite/3.36 57) NLopt/2.7.0 67) Ghostscript/9.54.0 77) libgeotiff/1.7.0
8) libpciaccess/0.16 18) FFTW/3.3.10 28) xorg-macros/1.19.3 38) libGLU/9.0.2 48) PCRE2/10.37 58) libogg/1.3.5 68) JasPer/2.0.33 78) pybind11/2.7.1
9) hwloc/2.5.0 19) ScaLAPACK/2.1.0-fb 29) X11/20210802 39) pixman/0.40.0 49) NASM/2.15.05 59) FLAC/1.3.3 69) LittleCMS/2.12 79) SciPy-bundle/2021.10
10) OpenSSL/1.1 20) bzip2/1.0.8 30) gzip/1.10 40) libffi/3.4.2 50) libjpeg-turbo/2.0.6 60) libvorbis/1.3.7 70) ImageMagick/7.1.0-4 80) libtirpc/1.3.2
Procedemos a entrar al terminal de R:
[usuario@drago31010015 ~]$ R
R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
During startup - Warning messages:
1: Setting LC_CTYPE failed, using "C"
2: Setting LC_COLLATE failed, using "C"
3: Setting LC_TIME failed, using "C"
4: Setting LC_MESSAGES failed, using "C"
5: Setting LC_MONETARY failed, using "C"
6: Setting LC_PAPER failed, using "C"
7: Setting LC_MEASUREMENT failed, using "C"
>
Procedemos con la instalación. dada2 está disponible a través de repositorio Bioconductor, por tanto procedemos de la siguiente forma, donde nos indica que /dragofs/sw/foss/0.2/... es de sólo lectura y le indicamos que nos instale el paquete en nuestro home. Por tanto, procedemos instalar BiocManager tal como sigue:
> install.packages("BiocManager")
Warning in install.packages("BiocManager") :
'lib = "/dragofs/sw/foss/0.2/software/R/4.1.2-foss-2021b/lib64/R/library"' is not writable
Would you like to use a personal library instead? (yes/No/cancel) yes
Would you like to create a personal library
'~/R/x86_64-pc-linux-gnu-library/4.1'
to install packages into? (yes/No/cancel) yes
--- Please select a CRAN mirror for use in this session ---
Secure CRAN mirrors
1: 0-Cloud [https]
2: Australia (Canberra) [https]
3: Australia (Melbourne 1) [https]
4: Australia (Melbourne 2) [https]
5: Austria [https]
6: Belgium (Brussels) [https]
7: Brazil (PR) [https]
8: Brazil (SP 1) [https]
9: Brazil (SP 2) [https]
10: Bulgaria [https]
11: Canada (MB) [https]
12: Canada (ON 1) [https]
13: Canada (ON 2) [https]
14: Chile (Santiago) [https]
15: China (Beijing 2) [https]
16: China (Beijing 3) [https]
17: China (Hefei) [https]
18: China (Hong Kong) [https]
19: China (Guangzhou) [https]
20: China (Jinan) [https]
21: China (Lanzhou) [https]
22: China (Nanjing) [https]
23: China (Shanghai 2) [https]
24: China (Shenzhen) [https]
25: Colombia (Cali) [https]
26: Costa Rica [https]
27: Cyprus [https]
28: Czech Republic [https]
29: Denmark [https]
30: East Asia [https]
31: Ecuador (Cuenca) [https]
32: France (Lyon 1) [https]
33: France (Lyon 2) [https]
34: France (Marseille) [https]
35: France (Paris 1) [https]
36: Germany (Erlangen) [https]
37: Germany (G<U+00F6>ttingen) [https]
38: Germany (Leipzig) [https]
39: Germany (M<U+00FC>nster) [https]
40: Greece [https]
41: Iceland [https]
42: India (Bengaluru) [https]
43: India (Bhubaneswar) [https]
44: Indonesia (Banda Aceh) [https]
45: Iran (Mashhad) [https]
46: Italy (Milano) [https]
47: Italy (Padua) [https]
48: Japan (Yonezawa) [https]
49: Korea (Gyeongsan-si) [https]
50: Mexico (Mexico City) [https]
51: Mexico (Texcoco) [https]
52: Morocco [https]
53: Netherlands (Dronten) [https]
54: New Zealand [https]
55: Norway [https]
56: South Africa (Johannesburg) [https]
57: Spain (A Coru<U+00F1>a) [https]
58: Spain (Madrid) [https]
59: Sweden (Ume<U+00E5>) [https]
60: Switzerland (Zurich 1) [https]
61: Taiwan (Taipei) [https]
62: Turkey (Denizli) [https]
63: Turkey (Istanbul) [https]
64: UK (Bristol) [https]
65: UK (London 1) [https]
66: USA (IA) [https]
67: USA (MI) [https]
68: USA (MO) [https]
69: USA (OH) [https]
70: USA (OR) [https]
71: USA (PA 1) [https]
72: USA (TN) [https]
73: United Arab Emirates [https]
74: Uruguay [https]
75: (other mirrors)
Selection: 58
trying URL 'https://cran.rediris.es/src/contrib/BiocManager_1.30.23.tar.gz'
Content type 'application/x-gzip' length 589753 bytes (575 KB)
==================================================
downloaded 575 KB
During startup - Warning messages:
1: Setting LC_CTYPE failed, using "C"
2: Setting LC_TIME failed, using "C"
3: Setting LC_MESSAGES failed, using "C"
4: Setting LC_MONETARY failed, using "C"
5: Setting LC_PAPER failed, using "C"
6: Setting LC_MEASUREMENT failed, using "C"
* installing *source* package 'BiocManager' ...
** package 'BiocManager' successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
During startup - Warning messages:
1: Setting LC_CTYPE failed, using "C"
2: Setting LC_TIME failed, using "C"
3: Setting LC_MESSAGES failed, using "C"
4: Setting LC_MONETARY failed, using "C"
5: Setting LC_PAPER failed, using "C"
6: Setting LC_MEASUREMENT failed, using "C"
** help
*** installing help indices
** building package indices
During startup - Warning messages:
1: Setting LC_CTYPE failed, using "C"
2: Setting LC_TIME failed, using "C"
3: Setting LC_MESSAGES failed, using "C"
4: Setting LC_MONETARY failed, using "C"
5: Setting LC_PAPER failed, using "C"
6: Setting LC_MEASUREMENT failed, using "C"
** installing vignettes
** testing if installed package can be loaded from temporary location
During startup - Warning messages:
1: Setting LC_CTYPE failed, using "C"
2: Setting LC_TIME failed, using "C"
3: Setting LC_MESSAGES failed, using "C"
4: Setting LC_MONETARY failed, using "C"
5: Setting LC_PAPER failed, using "C"
6: Setting LC_MEASUREMENT failed, using "C"
** testing if installed package can be loaded from final location
During startup - Warning messages:
1: Setting LC_CTYPE failed, using "C"
2: Setting LC_TIME failed, using "C"
3: Setting LC_MESSAGES failed, using "C"
4: Setting LC_MONETARY failed, using "C"
5: Setting LC_PAPER failed, using "C"
6: Setting LC_MEASUREMENT failed, using "C"
** testing if installed package keeps a record of temporary installation path
* DONE (BiocManager)
The downloaded source packages are in
'/tmp/RtmpjI1bbV/downloaded_packages'
>
Una vez instalado BiocManager procedemos a instalar finalmente dada2 . Tardará unos minutos.
> BiocManager::install("dada2")
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
CRAN: https://cran.rediris.es
Bioconductor version 3.14 (BiocManager 1.30.23), R 4.1.2 (2021-11-01)
Installing package(s) 'BiocVersion', 'dada2'
also installing the dependencies 'MatrixGenerics', 'DelayedArray', 'GenomeInfoDbData', 'SummarizedExperiment', 'S4Vectors', 'GenomeInfoDb', 'BiocParallel', 'Rsamtools', 'GenomicAlignments', 'Biobase', 'GenomicRanges', 'zlibbioc', 'Rhtslib', 'Biostrings', 'ShortRead', 'IRanges', 'XVector', 'BiocGenerics'
trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/MatrixGenerics_1.6.0.tar.gz'
Content type 'application/octet-stream' length 28270 bytes (27 KB)
==================================================
downloaded 27 KB
....
** testing if installed package keeps a record of temporary installation path
* DONE (dada2)
The downloaded source packages are in
'/tmp/RtmpjI1bbV/downloaded_packages'
Installation paths not writeable, unable to update packages
path: /dragofs/sw/foss/0.2/software/R/4.1.2-foss-2021b/lib64/R/library
packages:
AICcmodavg, AUC, AlgDesign, BBmisc, BCEE, BDgraph, BH, BIGL, BMA,
BatchJobs, BayesianTools, BiasedUrn, Boruta, Brobdingnag, CBPS, CVST,
Cairo, DBI, DEoptim, DEoptimR, DHARMa, DT, DTRreg, DiagrammeR,
DistributionUtils, ENMeval, EValue, EasyABC, EnvStats, Exact, FME, FNN,
FactoMineR, FactorCopula, Formula, GGally, GJRM, GPArotation, GSA, GUTS,
GenSA, GeneNet, GillespieSSA, Hmisc, IDPmisc, ISOcodes, Iso, JADE, KODAMA,
KernSmooth, MALDIquant, MCMCpack, MatchIt, Matching, MatrixModels, NCmisc,
OceanView, OpenMx, PCAmatchR, ParamHelpers, PearsonDS, PermAlgo,
PresenceAbsence, Publish, R.cache, R.matlab, R.methodsS3, R.oo, R.rsp,
R.utils, RCircos, RColorBrewer, RCurl, RGCCA, RInside, RItools, RJSONIO,
RMTstat, RNeXML, ROI, RSNNS, RSQLite, RUnit, RWeka, Rborist, Rcpp,
RcppArmadillo, RcppEigen, RcppGSL, RcppParallel, RcppRoll, RcppThread,
Rdpack, Rglpk, Rmpfr, Rmpi, Rook, Rserve, Rssa, Rtsne, Rttf2pt1, SBdecomp,
SKAT, SignifReg, SnowballC, SparseM, StanHeaders, StatMatch, SuperLearner,
SuppDists, TH.data, TMB, TTR, TeachingDemos, TraMineR, V8, VGAM, VIM,
VennDiagram, VineCopula, WeightSVM, WikidataR, WikipediR, WriteXLS, XML,
abc, abc.data, acepack, adabag, ade4, akima, alabama, aod, apcluster, ape,
argparse, arm, askpass, asnipe, audio, aws, backports, bartMachine,
bartMachineJARs, base64, bayesm, bayesplot, bbmle, bdsmatrix, beanplot,
betareg, bibtex, bigmemory, bigmemory.sri, bindrcpp, bio3d, biomod2, bit,
bitops, blavaan, blob, bold, boot, brew, bridgedist, brio, brms, broom,
broom.helpers, broom.mixed, bslib, bst, cNORM, cSEM, cachem, callr, car,
carData, caret, catlearn, checkmate, chemometrics, chron, circlize,
circular, class, classInt, cli, clipr, clue, cluster, clusterGeneration,
clustree, cmprsk, cobalt, cobs, coda, codetools, coin, collapse,
colorspace, colourpicker, commonmark, compositions, conquer, copula,
corrplot, covr, covsim, cowplot, coxme, cpp11, crayon, credentials,
crosstalk, crul, cubature, cubelyr, curl, cvAUC, dagitty, data.table,
data.tree, date, dbarts, dbplyr, ddalpha, deSolve, deal, debugme, deldir,
dendextend, desc, devtools, dfidx, dichromat, digest, dimRed, diptest,
dismo, distr, distrEx, distributional, doMC, doParallel, doRNG, doSNOW,
dotCall64, dplyr, dtplyr, dtw, e1071, earth, ellipse, emdbook, emulator,
energy, ergm, ergm.count, evaluate, evd, expm, extRemes, extrafont, fansi,
farver, fastICA, fastcluster, fasterize, fastmap, fastmatch, fdrtool, ff,
fftw, fields, filehash, finalfit, findpython, fitdistrplus, flexclust,
flexmix, fma, fmri, fontawesome, forcats, foreach, forecast, foreign,
formatR, fpc, fracdiff, fs, future, future.apply, gWidgets2,
gWidgets2tcltk, gam, gamlss, gamlss.data, gamlss.dist, gamlss.tr, gap,
gargle, gaussquad, gbRd, gbm, gdata, gdistance, gee, geepack, geex, geiger,
generics, geojsonsf, geometries, geometry, gert, getopt, ggExtra,
ggbeeswarm, ggdag, ggforce, ggnetwork, ggplot2, ggpubr, ggraph, ggrepel,
ggridges, ggsci, ggsignif, ggvis, gh, git2r, gitcreds, gld, gllvm, glmmML,
glmmTMB, glmnet, globals, glue, gmm, gmodels, gmp, gnumeric, googledrive,
googlesheets4, gower, gplots, grImport2, graphlayouts, grf, gsalib, gsl,
gsw, gt, gtable, gtools, gtsummary, h2o, hal9001, harmony, hash, haven,
hdf5r, hdm, hexbin, highr, hms, htmlTable, htmltools, htmlwidgets, httpuv,
httr, hunspell, hwriter, ica, idr, ie2misc, igraph, image.binarization,
imager, influenceR, infotheo, intergraph, interpretR, inum, ipred, irace,
irlba, isoband, iterators, janeaustenr, jomo, jpeg, jsonify, jsonlite,
jstable, kde1d, kedd, kernlab, klaR, knitr, kohonen, ks, labdsv, labeling,
labelled, laeken, lars, later, lattice, latticeExtra, lava, lavaan, lazy,
ldbounds, leafem, leaflet, leaflet.providers, leaps, leiden, lhs, libcoin,
lifecycle, limSolve, linprog, listenv, lme4, lmom, lmtest, lobstr, locfit,
logcondens, logistf, logspline, longitudinal, longmemo, loo, lpSolve,
lpSolveAPI, lslx, lubridate, lwgeom, mRMRe, magic, magick, magrittr,
mapproj, maps, markdown, mathjaxr, matlab, matrixStats, matrixcalc, maxLik,
maxlike, mboost, mclust, mcmc, mda, medflex, memoise, memuse, metadat,
metafor, mets, mgcv, mhsmm, mi, mice, miceadds, microbenchmark, minpack.lm,
minqa, mirt, miscTools, missForest, mitml, mixtools, mlbench, mlegp, mlr,
mnormt, modelr, momentfit, moments, mpath, msm, mstate, multcomp,
multicool, multipol, munsell, mvabund, mvnfast, mvtnorm, naniar, ncbit,
ncdf4, network, networkDynamic, neuRosim, nleqslv, nlme, nloptr, nlsem,
nnet, nnls, nonnest2, nor1mix, norm, np, oai, oce, openair, openssl,
openxlsx, optimx, optmatch, optparse, ordinal, origami, orthopolynom,
outliers, pROC, packrat, pammtools, pamr, pan, parallelly, parsedate,
party, partykit, pastecs, patchwork, pbapply, pcaPP, pdp, pec, penalized,
peperr, permute, phangorn, phylobase, phytools, pillar, pinfsc50, pixmap,
pkgbuild, pkgload, pkgmaker, plot3D, plot3Drgl, plotly, plotmo, plotrix,
pls, plyr, png, poLCA, polspline, polyclip, polycor, polynom, posterior,
prabclus, pracma, prettyunits, processx, prodlim, progress, progressr,
projpred, promises, proxy, pryr, ps, pscl, pspline, psych, pulsar, purrr,
qgam, qgraph, qqman, qrnn, quantmod, quantreg, questionr, rJava,
randomForest, randtoolbox, rangeModelMetadata, ranger, raster, rasterVis,
rbibutils, rda, readODS, readr, readxl, recipes, regsem, relsurv, rematch,
remotes, reprex, resample, reshape, reticulate, rex, rgbif, rgexf, rgl,
ridigbio, rio, riskRegression, rjson, rlang, rlecuyer, rmarkdown, rms,
rncl, rnetcarto, rngWELL, robustbase, rootSolve, rotl, roxygen2, rpact,
rpart, rpf, rprojroot, rrcov, rredlist, rsconnect, rstan, rstantools,
rstatix, rstudioapi, rversions, rvertnet, rvest, rvinecopulib, s2,
sampling, sandwich, sass, scales, scam, scatterplot3d, sctransform,
seewave, segmented, sem, semTools, sendmailR, sensemakr, seqinr, servr,
sessioninfo, setRNG, sf, sfheaders, sfsmisc, shape, shapefiles, shiny,
shinyjs, shinystan, signal, slam, sm, smoother, sn, sna, snowfall,
sourcetools, sp, spData, spaMM, spam, spatial, spatstat, spatstat.data,
spatstat.geom, spatstat.linnet, spatstat.sparse, spatstat.utils, spocc,
stargazer, stars, startupmsg, statmod, statnet.common, stringdist, stringi,
stringr, strucchange, styler, subplex, survey, survival, survivalROC, svd,
sys, tableone, taxize, tclust, tensorA, tergm, terra, testthat, tibble,
tictoc, tidygraph, tidyr, tidyselect, tidytext, tidyverse, tiff, timeDate,
timereg, tinytex, tkrplot, tm, tmap, tmle, tmvtnorm, tokenizers,
topicmodels, tree, triebeard, truncnorm, tseries, tsna, tsne, tuneR, twang,
tweedie, tweenr, tzdb, ucminf, units, unmarked, urca, uroot, usethis, utf8,
uuid, vcd, vcfR, vctrs, vegan, vioplot, vipor, viridis, viridisLite,
visNetwork, visdat, vroom, waldo, waveslim, wdm, webshot, whisker, withr,
wk, worrms, xfun, xgboost, xml2, xopen, xts, yaImpute, yaml, zip, zoo
>
Vamos a comprobar las versiones instaladas
> packageVersion("BiocManager")
[1] '1.30.23'
> packageVersion("dada2")
[1] '1.22.0'
> q()
Save workspace image? [y/n/c]: y
[usuario@drago31010015 ~]$ ls -lh
total 4.0K
drwxr-s--- 3 usuario centro4 4.0K Jul 31 11:07 R